Protein Info for Psest_3561 in Pseudomonas stutzeri RCH2

Annotation: Protein of unknown function (DUF2796).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF10986: DUF2796" amino acids 36 to 201 (166 residues), 194.4 bits, see alignment E=7e-62

Best Hits

KEGG orthology group: None (inferred from 79% identity to psa:PST_0827)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRP8 at UniProt or InterPro

Protein Sequence (205 amino acids)

>Psest_3561 Protein of unknown function (DUF2796). (Pseudomonas stutzeri RCH2)
MRHLLLAVPVLLLPLSYSHAQEEHHHHAHEEASSLGAHEHGAARLNVALDGKRLELELFS
PAMNLLGFEHAPANAADEAKIASARSQLEQPQALFGLPAAAGCSLSEQQFAGELLGSAHA
GYQRGDQHDHKQEHKHGHDDHEAAGHSDIEAHYQFDCSKPDALQALDLKGLFESFPGTEK
IQVQLIGPNGQQGVELTPARSQLPF