Protein Info for Psest_3540 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 transmembrane" amino acids 1122 to 1141 (20 residues), see Phobius details PF13555: AAA_29" amino acids 23 to 58 (36 residues), 28.2 bits, see alignment (E = 2.6e-10) PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 37.4 bits, see alignment 4.9e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 87% identity to psa:PST_0847)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRU8 at UniProt or InterPro

Protein Sequence (1217 amino acids)

>Psest_3540 hypothetical protein (Pseudomonas stutzeri RCH2)
MKILAIRLKNLASLAGEQVIDFTTEPLASAGLFAITGPTGAGKSTILDALCLALFGSTPR
LDSVSPLNKVPDVEAEIGGGDERNLLRRGCGAGFAEVDFVGVDGHRYRARWEVKRAREKV
DGRLQASSQSLTDLDSGTLLASGKKREFKELLEARLGLTLAQFTRAVLLAQSEFSAFLKA
DDNERGTLLEKLTDTGLYSRLGQAAFEAAKQAKESLTRLEQQAGGLQPLEPEQRDVLERE
HQAQLEELKKLQQQLKELEAQRQWLSELQRLENEREAARQQLQDAEDERESLTAARRILD
LFELLAPQRHRFLRQQELEPLLGKAAESLTRLQHEAQSLQQRLDSLQRQCEAAGNDLRAA
EQARQTAEPRLAQARREEERLSHLNADLASIREESAQADAAASAGEATLKQLGDQQQRAA
EQLATLTQQLETSAALQPLCVAWGGYRPRLQQAVQLAARLQQGQSELPALQAQAEAAESQ
QSLAREALDNLQRERDSELGLAEQLAGLHRQLDEWRQAERETDALQQLWAQQLTLTASQH
ELSNANSRQQAELDSLVPLGKQVRNDRDAAEQALKVTLALLERQRLARSENVEALRASLV
PGEPCPVCGSDEHPWQQTDALVASLDRHDDSEAAHAQQALQEQDQRLQELRDRHVALSTQ
LRQTQQRQSEVELQLQALAPRLLALPVHTRLLEQPEAERSQWLETQLTNLKDQIASASQR
QQQLLALQQRSETLQQAWQAAREACVEATQQLARQRDALARDSQQLDEELLAFAELLPVE
QLQRWRENPAQTFMQLDASIATRLQQLQAQTELAEELRQCEQRRSDEQLQQRHRQEKQAS
CSARLSEREKLLLACQQALRTSLGEQSSASAWQQQLDAAIQTARQAQTAIDQQLNESKLG
LTRLHSEQQNCRQRHAELAQERDALNAELASWRADHPQLDDASLAQLLHMDDQLIAEARQ
RLRENSDSLTRCRERLDGCLNRLNLHKQQQSDAPDTEQLQQRYAEQLQQCEQADQRCAET
RAQLIDDDKRRSQSQALLTQIDAARAEHQRWGRIAALIGSSDGGAFRKIAQAYNLDLLVQ
HANVQLRQLARRYRLKRGGSPLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSKLKIESLFIDEGFGSLDPESLQIAMDALDSLQAQGRKVAVISHVAEMHERIPVQIRV
RRQGNGQSDLQIVGGPS