Protein Info for PGA1_c35250 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 56 to 78 (23 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 147 to 165 (19 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 293 to 309 (17 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 70% identity to sit:TM1040_2850)

Predicted SEED Role

"Branched-chain amino acid ABC-type transport system, permease components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DVS0 at UniProt or InterPro

Protein Sequence (356 amino acids)

>PGA1_c35250 hypothetical protein (Phaeobacter inhibens DSM 17395)
MSHIDQNDIRAAVGSGLLSEAQAASLMALAHSRRGARENLAPGDEPFELFKGFNEIFIVI
GLIILATGWAAVTGISMVEGLGGLVQKATMSSLVGAVVLWVLSEYFIRRRRMVAPAIALS
ILWTLNAGVGLSAEYSQVFMVAQGDYSSLPLAVALTTISIAIYWLRFRVPFAMALIALGV
FTLALMLAANQSGSLTGMSDLFLLSASGPFAWVTLLVGVGVFAVAMLFDLSDPHRVTRRS
AQGFWLHVVAAPALVNTIALSLLDSGTSSANLTLMAVLLAFALVAIIIDRRSFLIAAIGY
SVTLAATVFDGDGAATTILVLGLFLVILGAFWARIRALLISPLSRVLPLDRLPPAH