Protein Info for PGA1_c34830 in Phaeobacter inhibens DSM 17395

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 265 to 289 (25 residues), see Phobius details amino acids 295 to 320 (26 residues), see Phobius details PF00664: ABC_membrane" amino acids 43 to 308 (266 residues), 68.9 bits, see alignment E=6.1e-23 PF00005: ABC_tran" amino acids 377 to 531 (155 residues), 119.1 bits, see alignment E=2.3e-38

Best Hits

Swiss-Prot: 50% identical to Y1051_HAEIN: Uncharacterized ABC transporter ATP-binding protein HI_1051 (HI_1051) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 83% identity to sil:SPO0027)

Predicted SEED Role

"ABC transporter, transmembrane ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E5K7 at UniProt or InterPro

Protein Sequence (612 amino acids)

>PGA1_c34830 ABC transporter ATP-binding protein (Phaeobacter inhibens DSM 17395)
MFRFFENLVDPYCDYLETDTPPRQLWPFLKDYSQPFKKVFAVTALMSVIVAGVEIGLIHY
MGRVVDLLSGEPAKVWQDHGTEFILLAVFILTVRPLLQLFDVLLLNNAILPNFGTLIRWR
SHKHVLRQSVGWFENDFAGRIANRIMQTPPAAGEVVFQVFDAITFALAYLVGAALLLWLA
DVRLLLPLLVWFALYAVLIRWTVRRVGPASQAASDARSTVTGRVVDSYSNIHSVKMFAHH
NTELTYAKEAIEGTRKTFQAEMRLYTIMDAALVTLNGLLIVGVVGWAILLWMQGLASVGV
VAAATALTLRLNAMTGWIMWALTTFFRQLGVVAEGMETIAQPIDLVDAANATPLDLREGA
VELRELSHHYGRGSGGLDRITLNIRAGEKIGLIGRSGAGKSTLVKLLLRFYDPEGGAILI
DGQDIRKATQDSLRSQIGMVQQDSALLHRSVRDNLLYGRPDATEAEMIEAAKQARAHEFI
LDLEDLEGRRGYDAHVGERGVKLSGGQRQRVTLARVILKDAPILILDEATSALDSEVEAE
IQQTLYGMMQGKTVIAIAHRLSTIAQMDRILVLDDGRIVEEGTHDVLLRSEGLYAQFWAR
QSGGFLNIEAAE