Protein Info for PGA1_c34750 in Phaeobacter inhibens DSM 17395

Annotation: putative aminotransferase class 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1009 PF01636: APH" amino acids 29 to 267 (239 residues), 87.1 bits, see alignment E=2.5e-28 PF01551: Peptidase_M23" amino acids 437 to 535 (99 residues), 46.4 bits, see alignment E=5.6e-16 PF00202: Aminotran_3" amino acids 614 to 1003 (390 residues), 230.8 bits, see alignment E=3.7e-72

Best Hits

KEGG orthology group: None (inferred from 74% identity to sit:TM1040_3387)

Predicted SEED Role

"aminotransferase, class III"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DVL9 at UniProt or InterPro

Protein Sequence (1009 amino acids)

>PGA1_c34750 putative aminotransferase class 3 (Phaeobacter inhibens DSM 17395)
MTAIHLAEDHWAAVLHDHWGIHAELSRLDGEYDLNYRALTPDGQGYILKAMRPGCVSDLV
DMQIAALAHLQNTDPGLPVPRTVAASNGELCLSLQDDTGEDRLVWVQTLLPGRCYAKSAP
KSAELIREIGATLAGTTRALKDFVHPALERRFKWDLMTADWITDDITCIADDSRQQLIAE
ICADFSSLKPQLEALPRQAIHNDANDYNILVTGELSEPRVVSGLIDLGDMCAAPRICDLA
IAAAYVVLDHPQPQRALAALVSGYHSVTPLTEEELGLLWPLLRMRLAVSVVNSTLEAKEN
PDDPYVTISQEPAWRFLDQPSEHPALITARLRATCGLTVVDGTDRVLAYLETHSGDFFPL
MGRDLTDFPMGSLSVEESTWPQNPFDMPLAEAAEVGQEFSGANGANWWLGYYREPRLIYT
APAFRKGEYLASDRRTVHLAVDVFAPAGQPLHAPLAGEVQVVEDRANHLDYGGVVILKHH
TDSGDAFYTLYGHLDPECCTRLSVGDKIAKGAPFCQLGTADQNGGWAPHVHFQLALSTEG
IEADWPGVADPDDLALWTALCPNPAPLLNLPAAQVSYQPTDKSTVLAGRRAHFGGNLSLT
YRDPVMLLRGWKHHLFDEWGRPYLDAYNNVPHVGHAHPRIQAIAADQLKRMNSNTRYLHP
AQNAFAEKILSKMPDHLEVCFFVNSGTEANELALRLARAHTGAKGMVTPDHGYHGNTTGA
IDISAYKFNAKGGVGPSDWVELVEVADDYRGTYGRDDPQRAQKYADLVDPAIAKLQASGH
GVAGFIAETFPSVGGQIIPPKGYLPAVYEKIRAAGGICIADEVQTGLGRLGEYYFGFEHQ
GASPDIVVLGKPIGNGHPLGVLVTTRAIADSFAQGPEFFSTFGGSTLSCRIGTEVLNIVD
EEGLQENARQRGADLLNGLRDLQSRHQAIGDVRGMGLFIGVELIRTDGSEASEICAYVKN
RMRDHRILIGSEGPKDNILKIRPPLTIDAEGIEMILKTLDSILSELSDS