Protein Info for Psest_0343 in Pseudomonas stutzeri RCH2

Annotation: hypothetical membrane protein, TIGR01666

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 134 (18 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 423 to 440 (18 residues), see Phobius details amino acids 445 to 463 (19 residues), see Phobius details amino acids 469 to 486 (18 residues), see Phobius details amino acids 492 to 510 (19 residues), see Phobius details amino acids 516 to 538 (23 residues), see Phobius details TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 12 to 717 (706 residues), 909.7 bits, see alignment E=1.2e-277 TIGR01666: TIGR01666 family membrane protein" amino acids 14 to 714 (701 residues), 766.8 bits, see alignment E=1.9e-234 PF12805: FUSC-like" amino acids 71 to 355 (285 residues), 363.7 bits, see alignment E=8.9e-113 amino acids 473 to 709 (237 residues), 24.9 bits, see alignment E=1.5e-09 PF04632: FUSC" amino acids 399 to 710 (312 residues), 63.7 bits, see alignment E=2.1e-21 PF13515: FUSC_2" amino acids 412 to 532 (121 residues), 87.5 bits, see alignment E=1.2e-28

Best Hits

Swiss-Prot: 43% identical to YCCS_ECOLI: Inner membrane protein YccS (yccS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to psa:PST_3906)

Predicted SEED Role

"FIG00956403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GI17 at UniProt or InterPro

Protein Sequence (732 amino acids)

>Psest_0343 hypothetical membrane protein, TIGR01666 (Pseudomonas stutzeri RCH2)
MPQPSLSQSLRRLWALEKFGYSLRVLIAMAGSMGLSWYLGQPTLIIPLFLGIIASALAET
DDSWLGRLNALLVTLLCFSIAAVAVELLFPYPWLFVAGLAVSTFALVMLGALGERYGAIA
QATLILAIYSMIAADQRNGELQHFWRDPLLLVAGAAWYGLLSVCWNALFAHQPVQQSLAR
LYRELGLYFRYKAALFEPVRQLDVEQRRLELAQQNGRVVNALNAAKETLLHRLGNGRAGG
KINHYLKLYFLAQDLHERVSSSHYPYQALAEAFFHSDVLFRCQRLLRLQASACAELGETI
QLRQAFRYSEANGQALEDLQASLEHLREQNNPAWRGLLRSLRALSGNLSTLQRQLASASD
PGTLEGEQDNSLLDRQPQTLREAFNRIRLQLTPTSLLFRHALRMTIALITGYAVLHAIHP
EQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLGLVAGWALFDLFPSQPIQALFAVVAG
VVFFATRSTRYTLATAAITLMVLFCFNQVGDGYGLIWPRLFDTLLGSLIAAAAVFLILPD
WQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKRDDLAYRLARRNAHNADAALSTTLSNML
LEPGHFRKDAETGFRFLILSHTLLNYLSGLGAHRESLPDDARDALLESAAQQLAASLDDL
AAALAQNRPIAIYSEEEEALAQQLEQTPDEMDDAHRLVQTQLGLICRQLAPLRSMAVHLL
KQQPAGQGQDQR