Protein Info for PGA1_c34650 in Phaeobacter inhibens DSM 17395

Annotation: UPF0090 protein YhbC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF02576: RimP_N" amino acids 18 to 90 (73 residues), 87.1 bits, see alignment E=8.2e-29 PF17384: DUF150_C" amino acids 93 to 161 (69 residues), 49.1 bits, see alignment E=5.6e-17

Best Hits

Swiss-Prot: 91% identical to RIMP_RUEST: Ribosome maturation factor RimP (rimP) from Ruegeria sp. (strain TM1040)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 91% identity to sit:TM1040_2909)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DVK9 at UniProt or InterPro

Protein Sequence (196 amino acids)

>PGA1_c34650 UPF0090 protein YhbC (Phaeobacter inhibens DSM 17395)
MTNDLIAKAAIDRRLAEIITPVIEDLGFELVRIRLMSGKTTTLQIMADKPDGGIEVDGCA
EISNAVSATLDVEDPILDSYALEVSSPGIDRPLTRLKDFEMFEGYEAKIETSELIDGRRR
FKGELAGVEGDEVLINIEEHGETITIGLKFDWLSDAKLVLTDDLIKEMLRQRKAAGTLNE
DAFDEIEADGSEEEKK