Protein Info for Psest_0341 in Pseudomonas stutzeri RCH2

Annotation: flavoprotein, HI0933 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details signal peptide" amino acids 24 to 24 (1 residues), see Phobius details PF03486: HI0933_like" amino acids 5 to 392 (388 residues), 332.5 bits, see alignment E=9.5e-103 PF12831: FAD_oxidored" amino acids 5 to 161 (157 residues), 40.1 bits, see alignment E=1.8e-13 PF00890: FAD_binding_2" amino acids 5 to 49 (45 residues), 37.5 bits, see alignment 1e-12 PF01134: GIDA" amino acids 5 to 35 (31 residues), 21.3 bits, see alignment (E = 7.8e-08) PF01266: DAO" amino acids 5 to 41 (37 residues), 30.1 bits, see alignment 2.2e-10 TIGR00275: flavoprotein, HI0933 family" amino acids 6 to 392 (387 residues), 432.5 bits, see alignment E=7.1e-134 PF13450: NAD_binding_8" amino acids 8 to 39 (32 residues), 27.6 bits, see alignment (E = 1.8e-09) PF22780: HI0933_like_1st" amino acids 188 to 339 (152 residues), 149.8 bits, see alignment E=3.9e-47

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 91% identity to psa:PST_3908)

Predicted SEED Role

"FIG00953568: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGR7 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Psest_0341 flavoprotein, HI0933 family (Pseudomonas stutzeri RCH2)
MVQTDVVVIGAGAAGLMCAFTAAARGRRVLLLDHANKAGKKILMSGGGRCNFTNLYTEPA
NFLSSNPHFCKSALARYTQWDFIEMVSRHGVAYHEKKLGQLFCDNKSSDILEMLLDECAQ
AGVDLRLDTAVESIAKRDEGYELNTGVGAVRCQSLVIATGGLSIPTLGASGAGYQIARQF
GHSVLPTRAGLVPFTITEPQLKTICTELSGTSVEDCLVSCNGQSFRENILFTHRGLSGPA
ILQISSYWQPGDVVHINLLPHLDLNEWLSAQKQERPNAELKTVLGDVFTRKMAGLLCEHW
FDSKPLKQYVPSELEAIAAKLADWQLVPAGTEGYRTAEVTLGGVDTREVSSKTMESQKSA
GLYFVGEVLDVTGHLGGFNFQWAWASGYAAGQYV