Protein Info for Psest_3462 in Pseudomonas stutzeri RCH2

Annotation: Lipopolysaccharide kinase (Kdo/WaaP) family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF06293: Kdo" amino acids 19 to 227 (209 residues), 187.8 bits, see alignment E=8.3e-60

Best Hits

Swiss-Prot: 42% identical to INAA_ECOLI: Protein InaA (inaA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 79% identity to psa:PST_0916)

Predicted SEED Role

"InaA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPN1 at UniProt or InterPro

Protein Sequence (239 amino acids)

>Psest_3462 Lipopolysaccharide kinase (Kdo/WaaP) family. (Pseudomonas stutzeri RCH2)
MNRPLVLPAREPRTSTFQRWWDTQGEWVEEPNRRRDGESGVQRIRLRDAQQPPLYCKRQI
GHLYRSLLHPFGRPTALRERYALQAMRDLSVGVPELVYCGTRQQAGRWQALLVTKALDGF
VSLEDWYGEDMPAYYGDTLQGRMLEAVGSTLGRIHQARWQHGCCYPKHIFLKVHGEGTAA
WVEVALLDLEKSRRRLRRSAAARHDLRQLKRHRQTMPEQDWQRLLAAHAAFSRARCDVI