Protein Info for HP15_3305 in Marinobacter adhaerens HP15

Annotation: molybdate ABC transporter, inner membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details TIGR02141: molybdate ABC transporter, permease protein" amino acids 10 to 217 (208 residues), 244.4 bits, see alignment E=4.7e-77 PF00528: BPD_transp_1" amino acids 27 to 216 (190 residues), 59.3 bits, see alignment E=2.1e-20

Best Hits

Swiss-Prot: 71% identical to MODB_AZOVI: Molybdenum transport system permease protein ModB (modB) from Azotobacter vinelandii

KEGG orthology group: K02018, molybdate transport system permease protein (inferred from 85% identity to maq:Maqu_3546)

Predicted SEED Role

"Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PR12 at UniProt or InterPro

Protein Sequence (226 amino acids)

>HP15_3305 molybdate ABC transporter, inner membrane subunit (Marinobacter adhaerens HP15)
MFETYWDPVWLTLKLATTTTLLLLLIGTPIAWWLARTRHWLRQPVAAVVALPLVLPPTVL
GFYLLLVMGPEGWVGQVTQSLGIGLLPFTFEGLVVASVIYSLPFTVQPLQNAFESVGDRF
LEVAATLRAAPWDRFLFVAVPLARNGFLTAAVLTFAHTIGEFGVILMIGGNIPGETKVLS
VAIYDHVESLEYTEAHWLSAGMVVFSFVVLVTLYALNGKARSGALR