Protein Info for Psest_3374 in Pseudomonas stutzeri RCH2

Annotation: Tfp pilus assembly protein, tip-associated adhesin PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1256 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 730 to 1059 (330 residues), 162.7 bits, see alignment E=6.9e-52

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GRC0 at UniProt or InterPro

Protein Sequence (1256 amino acids)

>Psest_3374 Tfp pilus assembly protein, tip-associated adhesin PilY1 (Pseudomonas stutzeri RCH2)
MPLKPPHMPKNGFSTTLRPLIVASLTLIWTLSASHAVADVSQTPLLLGGGNVPGNLALVP
SVEHPTVISVANLGTYNNNSIYTGYFDSGKCYNFIEEDFNHVFFGTISKANGGGYFTPVT
EMNSARDCSGNSSAKWSGNYLNWATTQTIDPFRKALTGGYRVVDTTSITILEKATRGNSS
NYFGNRTIDATNSNKTTPFGSVSLTSSVTSGSTDFQKNKTVRFTYSGSDNKTITKHFTVR
VEVCKKGLLESNCTKYGENLWKPEGLIQQYSKDIRYSVFSYLNENGNTRNGGVMRAPQGY
VGQTKRQPGTPNALPNELKEWSDETGIFYANPQNDSIGNSGVINYINKFGELTNRHKSND
PVSELYYAALRYFRFGKDGNVAAYSNITDESQRDKFPVITDWTDPIQYSCQKNVILGIGD
VNTHEDRDLPVTGDPLNVQEFTQKVFDLEGIDKSASSEFTGRGNSAYIAGMAYYANTTDL
REDRAGKQTISTHWVDVREGETLLEKARNQYWLAAKYGGFQVPNDYKFGGTIDQAWWWTN
GETLSPTNDKRPDNFYVASDATRMVESLKTAFAKIANNVRSTTAALSTNSTKLETGTVVF
QSMLDSADWSGNLLAKAVDSDGKVSATPSWRAAEKLDGLTNDQMSDRKIFTSLPPTADAT
SGALRSTTGRPFLWAQLNSAQQEALRRTAGESLTTETVGQNRLAFIRGDRRMERTDAAPN
NPFRQRGSRLGDIANSDPQFIHKQNFGYSQLPESAGFTAAAKSAYTTFRASPSYQSRPPL
VVVGANDGMLHGFDASLGTNGGKELFAYIPNDLIDELHELTDPTYSHRYYVDGTPRIGDA
WVGNAWKTLVIGSSGAGGRSIFALDISNPSDTSASSVLWEFTHPEMGYTLGRPSLVPLYN
GKFGVVVTSGYARPTSTTSGYVWILDAADGSVLKRFELPNSGDLGSPLVVDLDNDRVADR
IYVADTNGNVWRLDTNNTSIGNWDAPASLKSGGSIAPLFIAKDSTGVRQPITAPLDAAYT
KDRKIMLVFGTGSFYKTTDNEIPESPQVQSFYGIIDGGTPIDGRSKLLEQEILKEVSGSK
LNARAISQNTLETGHLGWYLDLQWKKSNNGPGPQGERVISQAQLGGNRVTFSTLIPSADP
CDAGGTSWIMSLDLATGSRLVYSYFDYNGDGKIDENDYIALDDGTKVPVSGVADPNEGAV
KGNISLNDQKKGKRYLCYASSASSTGSDGVTPVCIEVMGDNSDSNRLSWHEVRNNL