Protein Info for HP15_3249 in Marinobacter adhaerens HP15

Annotation: TRAP-type mannitol/chloroaromatic compound transport system, large permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 7 to 34 (28 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 216 to 241 (26 residues), see Phobius details amino acids 248 to 265 (18 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 320 to 349 (30 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 404 to 425 (22 residues), see Phobius details PF06808: DctM" amino acids 7 to 424 (418 residues), 303.7 bits, see alignment E=1e-94 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 423 (407 residues), 345.6 bits, see alignment E=1.7e-107

Best Hits

KEGG orthology group: None (inferred from 93% identity to maq:Maqu_3479)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQV6 at UniProt or InterPro

Protein Sequence (431 amino acids)

>HP15_3249 TRAP-type mannitol/chloroaromatic compound transport system, large permease component (Marinobacter adhaerens HP15)
MIGMIMFGVALVMLMLGFPVAFTFGGVALFFGIFAEGMDLFAFMPYRIMSVMQNTVLMAV
PLFIFMGVVLQRTRLAEQLLTSMGRLFGGLPGGLAISTILVGALLAASTGVVGASVVAMG
LISLPVMLAHKYDKRLATGTICASGTLGQIVPPSIILIILGDVLGLPVGDLFKAAVWPGV
VLVGLYIIYILVLTRLKPETAPAMPDEPGVSRKKEVFNALLAIIPPLALIVVVLGSIFTG
IATPTESSALGGVGAVVLAIIYRQFSFKMVWDASKDTVKVTAMVFAILIGATAFSMVFSY
TGGDYLLEEWLLQLPGEKWGFIILAMVVILVLGFFIDFVEISFIIVPILAPVAEAMGINM
LWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPPGVRTTDIYKGVLPFILIQMFVLALIVI
FPEWFGMSSSY