Protein Info for Psest_3361 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details PF04657: DMT_YdcZ" amino acids 8 to 145 (138 residues), 141.9 bits, see alignment E=8.7e-46

Best Hits

KEGG orthology group: K09936, hypothetical protein (inferred from 92% identity to psa:PST_0983)

Predicted SEED Role

"protein of unknown function DUF606"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPB7 at UniProt or InterPro

Protein Sequence (149 amino acids)

>Psest_3361 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MPTVAWWLLTLPFIAGALLPLQAGINGQVARQLGNVMGAALLSFAVGTLALFVIVLVQRD
VPALQTLKSLNWWHWSGGLLGAFFIATAAFAAPRTGALLFMALLLAGQLFVALLLDHFGW
AGFRQSSISLGKVAGLLLIFAGVWLIQRG