Protein Info for PGA1_c33420 in Phaeobacter inhibens DSM 17395
Annotation: DNA polymerase 3-like protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: K02340, DNA polymerase III subunit delta [EC: 2.7.7.7] (inferred from 82% identity to sit:TM1040_0043)Predicted SEED Role
"DNA polymerase II (EC 2.7.7.7)" in subsystem DNA-replication or DNA Repair Base Excision (EC 2.7.7.7)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.7.7.7
Use Curated BLAST to search for 2.7.7.7
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7DV77 at UniProt or InterPro
Protein Sequence (342 amino acids)
>PGA1_c33420 DNA polymerase 3-like protein (Phaeobacter inhibens DSM 17395) MKLSPREADGYFAKPDPGKTGFLIYGPDAMRVSLKRQQMLAALLGPTAEEEMRLTRMPAA DLRKDPALLMDAVKAVGFFPGIRAVFVEDANDTAAPAVIAALEGWQQGDAQIIVTAGQLK ASSKLRKAFEGHRNAYATGIYDDPPSRGEIERILGTARIRDVPGDSMSALVDIANEIGPG DFSRMVEKLALYKYEDSTPLTLDDIQAIAPQSTEAAVDDMLNIVAEGRGAEIGPLMGRLQ AQGTNAVTLCIGATRHFRTLYTIASDPGGPAQGIGRLRPPAYGKRRERLLRQAQSWGAFK LETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSRVG