Protein Info for Psest_3343 in Pseudomonas stutzeri RCH2

Annotation: Predicted periplasmic protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF10029: DUF2271" amino acids 21 to 161 (141 residues), 177.5 bits, see alignment E=5.4e-57

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_0999)

Predicted SEED Role

"FIG019993: putative exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GM51 at UniProt or InterPro

Protein Sequence (169 amino acids)

>Psest_3343 Predicted periplasmic protein (Pseudomonas stutzeri RCH2)
MRKRLLLPLALLSAPLYAADLQLDVEIPRLDVAEYHRPYVAIWLERPDQSHVANLAVWYD
TKLKDKEGEKWLKDLRQWWRRSGRSLEMPVDGVSGATRAVGSHSLKFSDQHPALKALEAG
EYRVVVEAAREVGGRELLRVPFSWPPQQSAEHQAQGQSELGAITLKLTP