Protein Info for PGA1_c33290 in Phaeobacter inhibens DSM 17395

Annotation: putative DNA translocase FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 70 to 95 (26 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details PF13491: FtsK_4TM" amino acids 21 to 175 (155 residues), 86.9 bits, see alignment E=2.7e-28 PF17854: FtsK_alpha" amino acids 553 to 653 (101 residues), 98.6 bits, see alignment E=4.3e-32 PF01580: FtsK_SpoIIIE" amino acids 661 to 880 (220 residues), 246.9 bits, see alignment E=3.4e-77 PF09397: FtsK_gamma" amino acids 990 to 1050 (61 residues), 95.8 bits, see alignment 2e-31

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E559 at UniProt or InterPro

Protein Sequence (1053 amino acids)

>PGA1_c33290 putative DNA translocase FtsK (Phaeobacter inhibens DSM 17395)
MAFQTRSRDPLLDSTMQAAIEKRGKELIGVLLIGLGLMVALMIGSYSADDPNWMVSTDAP
VQNLLGRTGASVAFILITLFGKASWAIALFLTVWGGRCVLHRGEDRFLWPLLLSLPWLLL
VSLHLETLVPSETWKSAHTFGLGGMIGYTFLGMLLALLPVGLIFLVKFLSLLTALGMVSL
GATVLGFTRPEVTRGLRFILVGLILIYGAIAGLLGRGAASGMQAALSYRSRRAERTAAAV
AMADVVDSAETDPQMFEPMDFDDSPMAAPPLGAPSLGPAAAPHARVEPAFEASQEEIPEP
VKEKTGLFARVPSLIRRADPVMPEPELVEPALNDMSAAADLDDLPGDERIAEKIASAVRV
RRAADVAPEVDFPLTKGRGRRPEPLIFNPNQATDGLPPEPPLTGASLDAMGAALGATPSL
PPAPETGFSAEIDPHRGYDDAAYDHPAVASSELQHDASPEFVDHVASEGLPNAHAVTSGA
AQMLRRAPQSEQAVADTPATAAPVTPPVTLPVAEPRRAVVEQPVRKQPQPSTRAKAEAQP
PLAFEDTSSDFELPPLSLLTSPAQIERHHLSDEALEENARMLESVLDDYGVKGDIVSVRP
GPVVTMYELEPAPGLKASRVIGLADDIARSMSALSARVSTVPGRTVIGIELPNDKREKVV
LREILASRDFGDGTHALPLALGKDIGGDSMVANLAKMPHLLIAGTTGSGKSVAINTMILS
LLYKLTPDECRLIMIDPKMLELSVYDGIPHLLSPVVTDPKKAVVALKWVVGEMEDRYRKM
SKMGVRNIAGFNGRVKEALSKGEMFSRTVQTGFDDDTGEPVFETEEFAPEALPYIVVIVD
EMADLMMVAGKEIEACIQRLAQMARASGIHLIMATQRPSVDVITGTIKANFPTRISFQVT
SKVDSRTILGEMGAEQLLGMGDMLYMAGGAKITRCHGPFVSDEEVEEVVNHLKQFGPPEY
IGNVLDGPDDEKADNIDAVLGLSTGGNTDTEDALYDTAVQIVIKDRKCSTSYIQRKLAIG
YNKAARLVEQMEEEGLVSPANHVGKREILVPEQ