Protein Info for PGA1_c33100 in Phaeobacter inhibens DSM 17395

Annotation: protein RarD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 108 to 125 (18 residues), see Phobius details amino acids 132 to 149 (18 residues), see Phobius details amino acids 154 to 171 (18 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details PF00892: EamA" amino acids 13 to 147 (135 residues), 48.2 bits, see alignment E=7.1e-17 TIGR00688: protein RarD" amino acids 14 to 263 (250 residues), 207.2 bits, see alignment E=1.6e-65

Best Hits

Swiss-Prot: 43% identical to RARD_STREX: Protein RarD (rarD) from Streptomyces exfoliatus

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 75% identity to sit:TM1040_0071)

Predicted SEED Role

"RarD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F3G6 at UniProt or InterPro

Protein Sequence (297 amino acids)

>PGA1_c33100 protein RarD (Phaeobacter inhibens DSM 17395)
MTPQPENKDTPQGLAFAVSAYLMWGFLPLYMKALAHMPAAEVVAHRVIWSVPVAGVLLII
LRRTRDLRAALTSPRVLMMGAVTAALISVNWGIYVWSIATGHALDAALGYYINPLFSVML
GAVLLGERLSPAQLVAIGLAALAVLVLALDAGRLPWAAIGLTLSWGFYAFFKKSLPVGPN
QGFMLEVLLLTPPALAYLAYLTVTGGAHFGGDFSDTALLLGCGVVTAVPLITYANGAKLL
RLSTIGILQYIAPTMIFLAAVFVFGEEFGRARMIAFPMIWLALVIYSVSLLRQMRRA