Protein Info for Psest_0325 in Pseudomonas stutzeri RCH2

Annotation: Putative threonine efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 60 (27 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 168 (154 residues), 63.4 bits, see alignment E=1e-21

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3924)

Predicted SEED Role

"Lysine exporter protein (LYSE/YGGA)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GG04 at UniProt or InterPro

Protein Sequence (200 amino acids)

>Psest_0325 Putative threonine efflux protein (Pseudomonas stutzeri RCH2)
MNATYLAFAAAVALLIASPGPVVALVVADARRRWPLWTILGGAISAQILMIAALVMIYLA
LDLDPLVLEAGQILGGLYLIWLGCDGLCGGRSETATPKRSEAHYFWRAMAVGLSNPKDIL
FFLAFLPGFILPAQPFAPQATVLIVIWAAIDLSILLAYSLLSRRLAGEGLIQRLLDILPN
YFLIGLGLVSCTLGLSRLLE