Protein Info for PGA1_c32750 in Phaeobacter inhibens DSM 17395

Annotation: manganese transport system membrane protein MntD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 38 to 61 (24 residues), see Phobius details amino acids 66 to 84 (19 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 134 to 151 (18 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 198 to 229 (32 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 269 to 269 (1 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details PF00950: ABC-3" amino acids 14 to 131 (118 residues), 79.2 bits, see alignment E=1.9e-26 amino acids 160 to 268 (109 residues), 66.5 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: K11709, manganese/zinc/iron transport system permease protein (inferred from 86% identity to sil:SPO3363)

Predicted SEED Role

"Manganese ABC transporter, inner membrane permease protein SitD" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ERF8 at UniProt or InterPro

Protein Sequence (309 amino acids)

>PGA1_c32750 manganese transport system membrane protein MntD (Phaeobacter inhibens DSM 17395)
MSGAEFVPLSLTPLLIGIFAAVACALPGNFLLLRRQALIGDAISHVVLPGIVVAFLLTGV
IAAGPMMLGAAGAAIAAVVLIELIRRLGRIEPGAAMGVVFTTMFAGGVLLLEQTDTSTVH
LDVEHALYGNLESLIWLDATGWGSLLDPAALRYLPAELPRMALTLIGVTLFIALFWRSLK
ISTFDEGFARTLGIRTNLLGLGLVITAAIAAVAAFDAVGSIIVIAMFICPPAAARMMSNH
LEGQLGWSVAFAVVSAILGYVLAGYGPLWLGATDAVSAAGMIATVSGLLLAIAARFGPCR
HRAGAPAGI