Protein Info for Psest_3272 in Pseudomonas stutzeri RCH2

Annotation: TIGR00252 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 TIGR00252: TIGR00252 family protein" amino acids 5 to 119 (115 residues), 130.8 bits, see alignment E=1.3e-42 PF02021: UPF0102" amino acids 11 to 102 (92 residues), 97.5 bits, see alignment E=2.4e-32

Best Hits

Swiss-Prot: 84% identical to Y1070_PSEU5: UPF0102 protein PST_1070 (PST_1070) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K07460, putative endonuclease (inferred from 84% identity to psa:PST_1070)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLY1 at UniProt or InterPro

Protein Sequence (120 amino acids)

>Psest_3272 TIGR00252 family protein (Pseudomonas stutzeri RCH2)
MSDSQSSGRSAESLALHHLSSKGLRLLERNWSCRSGELDLVMLDGDTVVFVEVRYRRHTA
WGGALESVDMRKQHKLIKTAQLFLQKESRWARSPCRFDVVAIAATGKTEDLNWIRNAFDS