Protein Info for Psest_3271 in Pseudomonas stutzeri RCH2

Annotation: Putative lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF04348: LppC" amino acids 32 to 591 (560 residues), 597 bits, see alignment E=4e-183 PF13458: Peripla_BP_6" amino acids 250 to 434 (185 residues), 41 bits, see alignment E=2e-14

Best Hits

KEGG orthology group: K07121, (no description) (inferred from 90% identity to psa:PST_1071)

Predicted SEED Role

"LppC putative lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPP4 at UniProt or InterPro

Protein Sequence (600 amino acids)

>Psest_3271 Putative lipoprotein (Pseudomonas stutzeri RCH2)
MACLRPLLLLCLAAMLAACAGSPSSSLGELPRTPQASTQQLLQKADQSDPEQAAQLRLAA
ADQSVQQGKHAQARSILEQVQVEALKPAQQIFALTLQAEIALANAEPEQAVQALRHPSFE
RLGELPVEQQIRSQLVRAEALEATNKPLAAARERVFTAPLLSGEQARANHESIWKLVSAL
PEKQLQSAAEADLAGWQALALSLKRAGTVAQQQRAMDDWIAQNPQHPAAQQLPEPLQKLR
ELADQPLNHVALLLPMEGQLASVARALRDGFLAAHLHAQQAGQALNIELYDSSRMVSIDD
FYRQAQAAGVQLVIGPLEKDLVRQLAERDQLPITTLALNYSDAGQHTPPQLFQFGLAAED
EAREVARRAWADGHRRAIALAPRGDWGGRILDAFRQSWQEAGGTLVAAEPLAEPVQLANQ
IADLLQLRNSESRAGRVSSITDASTASQPTRRQDVDFIFLAATPQQAQQVRPTLIFQYAG
DLPVYGTSHLHSASHDRTQYLDLEGIRFAETPWLLDDQLPLRQEVEQKWPQAGGSLGRLY
AMGADAYLLAPRLNQLLALPDTQLDGLSGTLSLNPQQRIERHLPWAQFRDGAVERLEDAQ