Protein Info for Psest_0319 in Pseudomonas stutzeri RCH2

Annotation: Predicted ferric reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details PF01794: Ferric_reduct" amino acids 43 to 178 (136 residues), 57.4 bits, see alignment E=2.4e-19 PF00175: NAD_binding_1" amino acids 328 to 421 (94 residues), 25.8 bits, see alignment E=2.1e-09

Best Hits

KEGG orthology group: None (inferred from 95% identity to psa:PST_3930)

Predicted SEED Role

"putative flavocytochrome"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHN9 at UniProt or InterPro

Protein Sequence (443 amino acids)

>Psest_0319 Predicted ferric reductase (Pseudomonas stutzeri RCH2)
MRQIKLTYVALFVGLTLLWLLVDSFVMARYQIWPLRKVMVHYSGVLGIAAMSVAVILAAR
PRRFERFFDGLDKTYRLHKWLGISALVIAIFHWGWGQIPKWLVGFGWLEKPARRAGEGQM
HEGIFALLQRFRGLAETIGEWAFYAAVILIVLALVKRFPYRWFFKTHRWLALVYLALVAH
AVVLTPPDYWTSPLGLALAVLLVSGSVAACISLLRRIGRKHQVVGRIESLTHHRDNRVLR
VDIKLDGPWPGHKAGQFAFVTFDDKEGPHPFSLSSAWCNDGKLAFSIKGLGDYTRTLPDT
LKVGDAVKVEGPYGCFDFHSRKPRQIWVAGGIGIAPFIGRLQALAESGKGNNVDLFYCTS
APDQGFIERIRQLAERARVRLHVLVASEGGRLTPERLRQLAPQWQDSDVWFCGPAGFGQD
LSKDLQRHGLPPRDFHQELFNMR