Protein Info for HP15_3113 in Marinobacter adhaerens HP15

Annotation: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF00497: SBP_bac_3" amino acids 24 to 244 (221 residues), 91.6 bits, see alignment E=2.7e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PPK6 at UniProt or InterPro

Protein Sequence (268 amino acids)

>HP15_3113 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein (Marinobacter adhaerens HP15)
MLAFILCFSAPSYGDCDITLRWDDDPPYFMVQEGKVVGIDADLVREAMGRLDCGISFQKM
PWARALRELRDGHVDMLSGAYRTPEREEYAHYSEVVGLVSPNILFIRRSDESRFELNGLR
QLLESGFRLGAQIHVSYSDEYSALIQNPDYDKNIEYLSRREPLWLMLARDRVDGVVASQL
TGLYEIQELGLTGTLIPSSLVVSNKPAYFVFSKATVTAGFVADFDRALQSMLDDGTFASI
VNRYVCVAACAGLSETEDDPEDCSLAGL