Protein Info for Psest_3217 in Pseudomonas stutzeri RCH2

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1239 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details PF03924: CHASE" amino acids 83 to 266 (184 residues), 165.3 bits, see alignment E=5.9e-52 TIGR00229: PAS domain S-box protein" amino acids 352 to 468 (117 residues), 49.4 bits, see alignment E=2.4e-17 amino acids 464 to 590 (127 residues), 99 bits, see alignment E=1.1e-32 PF13188: PAS_8" amino acids 356 to 405 (50 residues), 32.9 bits, see alignment (E = 1.8e-11) amino acids 467 to 522 (56 residues), 32.1 bits, see alignment (E = 3.2e-11) PF00989: PAS" amino acids 357 to 447 (91 residues), 27.6 bits, see alignment 1e-09 amino acids 467 to 579 (113 residues), 54.5 bits, see alignment E=4.4e-18 PF08448: PAS_4" amino acids 363 to 461 (99 residues), 31.5 bits, see alignment E=7e-11 amino acids 473 to 584 (112 residues), 31.5 bits, see alignment E=7.1e-11 PF13426: PAS_9" amino acids 366 to 458 (93 residues), 34.4 bits, see alignment 8.8e-12 amino acids 477 to 581 (105 residues), 48.2 bits, see alignment E=4.5e-16 PF00512: HisKA" amino acids 604 to 671 (68 residues), 69.1 bits, see alignment 1.1e-22 PF02518: HATPase_c" amino acids 719 to 834 (116 residues), 104.2 bits, see alignment E=2.2e-33 PF00072: Response_reg" amino acids 859 to 962 (104 residues), 42.9 bits, see alignment E=2e-14 amino acids 979 to 1089 (111 residues), 30.2 bits, see alignment E=1.7e-10 amino acids 1113 to 1223 (111 residues), 63.1 bits, see alignment E=1e-20

Best Hits

KEGG orthology group: None (inferred from 87% identity to psa:PST_1123)

Predicted SEED Role

"FIG00959769: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPJ3 at UniProt or InterPro

Protein Sequence (1239 amino acids)

>Psest_3217 PAS domain S-box (Pseudomonas stutzeri RCH2)
MDDRPALHSRRSWLPLLVALALMAGLGGWIGWQWHVQEQRSKVEQEQRFTFAVDDIEHTL
RERMRAYEMVLRGLAGVVAGSDEVKVDDWARAADQLQLQDFYPGIQAVALARHATPETLD
GIIEQIRSSGRERFRMYPSGVRDEYVVTDYIHPTDWRNRRVLGFDLFSEATRREAIVNTR
NSGNPVLTGPLRLKQETEQNVQVGVLLFFPLYAATAPVTTEEERQRAFVGTLHGAFRLTD
LMEGILGSRSRMLQLQLFDAANPDSPLLAGRAPVSADAKFQRIRNIYMYGRSWQLQVAST
PEYEAVLRDNNRAFSLAAALTAAALFSLLVGGYLYLRERALRNSQALSLQLQEREARFRQ
LIEQLPVATLLCNAGGRIELANQSAAQLFGSTAELLAGERVSRYVPGVLGEQILRQLRET
SQLELQAQREDGRPIPVAVSLTSFNHDDALYYVLNLLDLQARKRDEERFRNVVEASPNAF
VLVDVHGDIVMVNRQTEVLFGYTRQELLGQPVEQLLPEALREAHRGLRQGYTEHPEPRRM
GSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVA
NRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEKQVRHADIIHRAGHELLQLIN
DVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEVDADVPVTLNSDR
ARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQLQVRDSGIGIAKDQHERIF
QAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFTVVLPIATVSGAS
TQALLPPQPQRRGRGPGLLIIEDDTDFASVVAEVGQSHGFTSLICNTGEQGLEALRREHF
AAVILDILLPDISGWQIHRELRGDERHQGMPVIIISCVPQPHDWHDDGSRYLVKPVAQSE
LERIFIELARHEHNPLRLLLVEAEPRRRVLIRDYFERLGYSVTLAGSSDSARLAYAEQTF
SVVVVDSELADGSGLDLLDAFERLRSLEGVTVLVNSREPLSEKDLQRLHRYAATVLSKEE
AVERLGALVRPEPAAPAPSAAVSLHLAAPGQRVLLVDEDVRLIYSLTAQLDELGIQVVPA
TSAAEALERFDEDAFDLVVLDMSRPGAEGPELARRLKQDHDCQAPIVALVGANDEGARER
CSASGADEVLIKPVEATALRELLRRRLDLESGTDEAEKE