Protein Info for PGA1_c32070 in Phaeobacter inhibens DSM 17395
Annotation: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K04768, acetoin utilization protein AcuC (inferred from 72% identity to rde:RD1_0096)Predicted SEED Role
"Deacetylases, including yeast histone deacetylase and acetoin utilization protein" in subsystem Hydantoin metabolism
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7E4Y3 at UniProt or InterPro
Protein Sequence (394 amino acids)
>PGA1_c32070 Deacetylases, including yeast histone deacetylase and acetoin utilization protein (Phaeobacter inhibens DSM 17395) MTQFTAAPTRPATADTATLFGPLEAPLFIGSEIYRGSSYGRMHPLRVPRVSTVMDLTRAL GWLPAAQYQTSPRAKPAALERWHSPEYIAALQAAERAQAVSEEVKARHHIGTISNPVFPE IFRRPATAAGGSILAGERLAQGGVIYNPAGGTHHGMPDRANGFCYLNDPVLAMLSLRHHG AKRIAYVDIDAHHADGVEHGFAGDPDVLMISTHEENLWPKTGKLVDDAGGSALNLPVPRG FNDSEMAYVLEELILPAVVNFAPDAVVLQCGADAVTEDPLAHLDLSNTAHWSVVAALRSL APRYLVLGGGGYNPWSVGRLWTGVWAVLNGHEIPDRLPPAAEGVLRGLEFKGHRLGRNPP EHWFTTLRDDPRPGPVREQIREAVTLLRRRRGLR