Protein Info for Psest_3183 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 33 to 65 (33 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details PF13559: DUF4129" amino acids 437 to 508 (72 residues), 34 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 82% identity to psa:PST_1157)

Predicted SEED Role

"5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLQ3 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Psest_3183 hypothetical protein (Pseudomonas stutzeri RCH2)
MQLSDASVSIRPRSPWQALDLGTLLARRHGALLMATWAAVTLPVFALISLLLWQHPSVAL
LLFWWLKPLYERLPLHILSRALFGETPNFRESLKAFPGLLRSQWFASLTWRRLSMTRSFD
LPVQQLEGLNGKARAQRLVTLNLRNGRAASWLTVVGVHLEGALWLGLLGMLYFFLPAPLV
QRWNWEDLLGLSGEWLWLEHLSNLLYVLVLIVWEPIYVACGFSLYLNRRTHLEAWDIELA
FRRLRQRLLTVLPALLLACGLLLWPAQHQAWAAAAAQTEEVQPGPKSKRLLNQPLTSEAA
RERIDALLDQPPFQHRETVTRWRLGDGDDPQQPGALARLIERLLQGGSFWHGLERLAQIL
EVLLWTALALLVALVLWRYREWLQTFGGRVRLPSRRRIEPPTQLFGLDVAPQSLPDDIAA
EAERLWQLDPRAALALLYRGLLCRLLHDFQLPLKAAHTEGEVLQQVRDLQLEPLARFAEQ
LTVHWQRQAYGHYPANEQVRDALCAEWRVLFAAGQSS