Protein Info for PGA1_c31710 in Phaeobacter inhibens DSM 17395

Annotation: putative cyclic nucleotide-binding ABC transporter transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1072 transmembrane" amino acids 48 to 65 (18 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 185 to 215 (31 residues), see Phobius details amino acids 282 to 309 (28 residues), see Phobius details PF00664: ABC_membrane" amino acids 93 to 320 (228 residues), 73.2 bits, see alignment E=3e-24 PF00027: cNMP_binding" amino acids 935 to 1019 (85 residues), 44 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: K02021, putative ABC transport system ATP-binding protein (inferred from 64% identity to sil:SPO3815)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ER86 at UniProt or InterPro

Protein Sequence (1072 amino acids)

>PGA1_c31710 putative cyclic nucleotide-binding ABC transporter transmembrane protein (Phaeobacter inhibens DSM 17395)
MSGGNDYGLTAAQPAGDFSLRSSDTQKEQGMQSTLFSFIWTYSRRQQIGLLALTMVTFPF
LYAALELPKRIINDAIGAPMDQVEVLGQQIGQVDYLLLLCVGFLAAVLISGLLKMRLNTM
KGIVAERLLRRLRYTLINRMMRFPAPYFRTTSQGELVSMITSESEPMGGLMGDAVAQPVF
QAGQMLTIVAFLFMQSVWFGLASVALIPLQAWLIPMLQRQINLLNKDRIQEVRAFSAEIG
ETAAGIGDLRINGGRRYRLAQISARLGRLFDIRRRIYTKKYFMKFLNNMIGHLTPFVFYS
AGGVLAIRGDITVGALVAALAAYKDLSAPWRELLTYYNQVQDMSLRWSIMTDRFAPKGMI
PEELIEGTPTDIPHLRGAIELRNVSVKDADGNMVLEDLSLTIPAGGRVAIQSSSEAERAA
FAALLTREIVPFRGSVTIAGYRLDQLHQGVIAARVGYAYSRPYLFNGSLGDNVLMSLRDH
PHMPAGSESRGKSRVMTEACRAGNSPDPLAADWINPALAGLGSENELRDWWFQLVEAMGI
DEQLFRRTLHTRFQIGPHLGLVQQIIALRPLVAERLAHAGLADVVHRFDPEVFNPAVPLG
GNILFAAPTRPLAPEELIAEDGPIISALRDHGLQQDVITFGLGVMETLRQTFGREDTNHP
LFKRLGLDEALYQRIAEVADRQATLGVTGLREDERVLLASVPFLISEEQIGTAFPERFKQ
RILDMRRDVAPALQAQLGDLFVSITPDAYLPRLTVLENVLYGRLSLSAGAKAKQVEDLVA
EVLEEHGLRKRLALILYDLPAGLGGTALEPVFQERAAFTRAAIKRPDILILDRALASHDS
ASRLKSRERLSKLMPNATMLFLEDQFNHPERYDIFVKIQNGRIDGVEGNLTDPMESAARN
DLGKRLELIQSTELFSKLDARNQRLLAFSARWHDVAKGDYVFQYGEAGDAVFLCLSGKAD
LFWPDRAPETAPISQIEPGRLIGDLAVILHETRQLDLIAVEDCRFLRIGAEEYRAVIEAD
AGVAVQLLETVSRHLVQVAGVARAADQNVADGDTPAVAAAAIVAEERPGNVH