Protein Info for Psest_3176 in Pseudomonas stutzeri RCH2

Annotation: Predicted ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 PF05872: HerA_C" amino acids 10 to 491 (482 residues), 696.4 bits, see alignment E=2.2e-213 PF01935: DUF87" amino acids 24 to 245 (222 residues), 24.8 bits, see alignment E=2.2e-09

Best Hits

Swiss-Prot: 50% identical to YJGR_ECOLI: Uncharacterized protein YjgR (yjgR) from Escherichia coli (strain K12)

KEGG orthology group: K06915, (no description) (inferred from 89% identity to psa:PST_1167)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNT2 at UniProt or InterPro

Protein Sequence (491 amino acids)

>Psest_3176 Predicted ATPase (Pseudomonas stutzeri RCH2)
MTAVVDRLMLGADSTGEPSTQSLRLANRHGLIAGATGTGKTVTLQRLAEQFSDAGVAVFA
ADIKGDLCGLGAAGLPQGKIAERIASMPWLNHQPQAYPVTLWDVHGRSGHPLRTTLSEMG
PLLLGNLLQLTDSQQAALYAAFKVADREGLLLLDLKDLKALLAHLKAEPQLLGEDSALFT
GASSQALLRRLATLEQQGIEALFGEPSLQLEDLLRPAADGRGAIHLLDASVLVHEAPKVY
ATFLLWLLAELFEQLPERGDADKPVLALFFDEAHLLFGDTPKALQERLVQVVRLIRSKGV
GVYFVTQSPADLPDQVLAQLGLRIQHGLRAYTVKEQKALRSVADGFRSNPAFATLDVLTQ
LGIGEALVGGLEEKGTPAMVQRVAIAPPQSRVGPLSEAERAVIVARSGLRGRYDKPVDRE
SAYEILAARAAQTVEQPKAVAEKTRRGQSTASGDLGDLAGRVVKSALSQAASQLGRQLAR
GLLGSLLGGKR