Protein Info for Psest_3156 in Pseudomonas stutzeri RCH2

Annotation: Site-specific recombinases, DNA invertase Pin homologs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 PF00239: Resolvase" amino acids 4 to 137 (134 residues), 128.6 bits, see alignment E=2.1e-41 PF13384: HTH_23" amino acids 146 to 177 (32 residues), 24.6 bits, see alignment 1.7e-09

Best Hits

Swiss-Prot: 36% identical to BINR_STAAU: Transposon Tn552 DNA-invertase BinR (resR) from Staphylococcus aureus

KEGG orthology group: None (inferred from 58% identity to sbp:Sbal223_1811)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNR8 at UniProt or InterPro

Protein Sequence (180 amino acids)

>Psest_3156 Site-specific recombinases, DNA invertase Pin homologs (Pseudomonas stutzeri RCH2)
MATVGYVRVSTVDQNTERQLDGLTLDKVFEDKCSGKDAHRPALQALIEYVREGDTVVVHD
ISRMARNLEDLLSLVKAFNKRGVAVRFNKEGLSFTGEANPMQELMLSMLGAVYQFERSMM
LERQREGIQQAKQAGKYRGGRPRVDAEAIKAALDSGLSIRKAAEALGVGISTVQRVKATA