Protein Info for Psest_3141 in Pseudomonas stutzeri RCH2

Annotation: ADP-ribose pyrophosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF14803: Nudix_N_2" amino acids 2 to 35 (34 residues), 63.9 bits, see alignment 9.8e-22 PF00293: NUDIX" amino acids 38 to 141 (104 residues), 57.5 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_1183)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPC5 at UniProt or InterPro

Protein Sequence (187 amino acids)

>Psest_3141 ADP-ribose pyrophosphatase (Pseudomonas stutzeri RCH2)
MKYCNQCGNPVLVRIPDGDNRPRFVCDACQTVHYQNPRIVAGCVPVWDDCVLLCRRAIEP
RRGYWTLPAGFMENGETLQQAAERETLEEACARVRDLQLYTLFDLPHINQVYMFFRAQLV
DLDFCAGDESLEVKLFEQQDIPWSELAFPTIGRTLECFFADRVQQTFPVRNEAVSGYRNR
QQNRITD