Protein Info for PGA1_c31290 in Phaeobacter inhibens DSM 17395

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 87 to 112 (26 residues), see Phobius details amino acids 121 to 146 (26 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 138 to 293 (156 residues), 48.9 bits, see alignment E=3.3e-17

Best Hits

KEGG orthology group: None (inferred from 54% identity to sno:Snov_3689)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DUP4 at UniProt or InterPro

Protein Sequence (306 amino acids)

>PGA1_c31290 ABC transporter ATP-binding protein (Phaeobacter inhibens DSM 17395)
MPRFLREFFNRNGYGLGSLMLGLVLFWTIGLIILPQLSMLDFSFRPNLPPPEIGGPKDVY
TLENYKYLVFGPEGGGQDYNAVDLRVFFRTLVAAVCVTLFNLILCYPIAYYLAQTKGNHI
RIFALMLIIPYWINEILRAFALRIIFGESGVLNTALVGMGVFDTPFDFIRNDIALYAGLG
YAYILLMIFPIYNVIESLDRNQIEAARDMGASWAKIHQRVVIPYAKPGISSGCTMVFMLS
AGALAAPQILGGPSSLWFTQLIYQQFNDNSDWPQGAAYAVVLLVTCILLVLAVMRLFKVN
MGDIGK