Protein Info for PGA1_c31270 in Phaeobacter inhibens DSM 17395

Annotation: putative glycosyltransferase / polysaccharide deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 transmembrane" amino acids 60 to 81 (22 residues), see Phobius details amino acids 753 to 776 (24 residues), see Phobius details amino acids 1035 to 1066 (32 residues), see Phobius details amino acids 1086 to 1107 (22 residues), see Phobius details amino acids 1118 to 1138 (21 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 523 to 626 (104 residues), 89.1 bits, see alignment E=7.5e-29 PF13641: Glyco_tranf_2_3" amino acids 797 to 1017 (221 residues), 110.6 bits, see alignment E=3.9e-35 PF10111: Glyco_tranf_2_2" amino acids 799 to 897 (99 residues), 34.6 bits, see alignment E=5.2e-12 PF00535: Glycos_transf_2" amino acids 799 to 954 (156 residues), 116.3 bits, see alignment E=5.2e-37 PF13506: Glyco_transf_21" amino acids 868 to 1016 (149 residues), 62.1 bits, see alignment E=1.8e-20 PF13632: Glyco_trans_2_3" amino acids 878 to 1067 (190 residues), 85.9 bits, see alignment E=1.2e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E4T2 at UniProt or InterPro

Protein Sequence (1175 amino acids)

>PGA1_c31270 putative glycosyltransferase / polysaccharide deacetylase (Phaeobacter inhibens DSM 17395)
MHTTTKNRTAPEARKRRSKPSAPQARVHKTFPTEILPAEMTSSTDAQRQIFKAGTATRPF
LAALFFVLGLALAAAMIIAVTQSVITEFKLARSLFQNNAPTDTVNSDWRRFLPQSDSLEG
DGGYDKLDSDGPSVATAAKNACQTHTSAARSASNNPSTLYAFVTADLEDVSNSVQRTCDT
INVFVPEWLIISDEGIDWLQSGNQDFGTPYIVRTNPFGDHPIQPLMHVQATALEEDGSRH
WSKAADLATRHGWSGLCFDMRRLEAQNLQKALTHLDGVRDDFAAKSLESCAVIAPDQIET
LSYGAALPDRVILPAVQNSYRLGIYEESPAPLDWFQTVLERARSTIPKEKLVIGMAAGGV
HWTTGAPAPEFISYADAMSQADQYGAFAGYAPEKGHGLISYMDARGERNMIWYLDAVSHY
SQLLSIAEAGIDGVAIWGLGQEDPSIWPLLAKEDILSDSAFDTLRDIDLNSFVSYRGTGP
FLRFAQKEVLGRRHVTRDAETLMVTDAVTDPLPLPVIADRYGTLPEKSILLTFDDGPAQD
HTQDILDILNDAEVPATFFMVGNQMFEQKNVVDALARSEFDFGLHTFSHPRLDRASPARV
QVELALQSRIFSWLTGQTPVVFRAPYMRGPGPLEGDLARRLKTIIDQRYHLLGADIVPPD
WRSLSPKQLVDYTLDALDGSGQVLLLHDGGGARSNTISALSLLIPELKARGYQFLTLKEA
MAGVGSPYETRQAASLEPFEALAFTGFGNSATWVAFLVPFAVLLGVIRALVLFVMAIRSR
RADRADLRHRTGDFSAPVTVVIPAYNEEKSILKTIYSVLESDYPNLSVLVVDDGSTDDTH
GLVTKTYKDNPNVQILRQPNGGKWKAANLAFSHVTTDYVVAIDADTIVAPDAIRRLMQPL
RNPKVGAVAGKIMVGNSNNLLTKLEKLEYTVAQNIDRRAYETINAIMVVPGAFGAWRTEA
VRKCGYYSSQTLAEDTDLTISLLEQGYEVRAAERAYAYTEAPASVGTLMKQRMRWSIGIL
QSAWKHRSTIRKGHAVGLVGLTDLVIFGVIMPLLGPIIDLLLVLMLVRFVSSFDGTTFDA
FTVRDYAVLSIFLALPLLEMIMADYAVRSEPTMPRSMVLLLLLNRLIYRQLLIINVYRSL
WRILTGRLTGWHKLRRFGSVQAPVRPTVAARARLS