Protein Info for HP15_3014 in Marinobacter adhaerens HP15

Annotation: AsmA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 721 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF05170: AsmA" amino acids 1 to 596 (596 residues), 221.9 bits, see alignment E=3e-69 PF13502: AsmA_2" amino acids 446 to 626 (181 residues), 69.8 bits, see alignment E=4e-23

Best Hits

KEGG orthology group: K07289, AsmA protein (inferred from 75% identity to maq:Maqu_3175)

Predicted SEED Role

"A/G-specific adenine glycosylase (EC 3.2.2.-)" in subsystem DNA repair, bacterial (EC 3.2.2.-)

Isozymes

Compare fitness of predicted isozymes for: 3.2.2.-

Use Curated BLAST to search for 3.2.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PNU8 at UniProt or InterPro

Protein Sequence (721 amino acids)

>HP15_3014 AsmA family protein (Marinobacter adhaerens HP15)
MKAVRYVLIAIVALIVLAVAAVAIAMAVINPNDYKPQIEQAVEDATNLDLVLEGDIGWSF
IPLGLELNSVEATLEGDRFVALEQLVAQIDFWSLIAMSPRVNTFVLDGLDARLEVDEQGN
GNWTRIMPEKAAGAATEETAGTQDEQAQESEGGGGEPLNFNVENVQISNAQVHYTDKSTG
QSVTLENFTVNASNITLGSEFPLEIGFRVATTQPTFEVDGNISARLAANEALNEFAVSGL
NAVFDMTGEPFGGKEVTAELAGSARANLENETANLSGFTASLANLNLSTDLDVTGFGDKP
TLSGEISIAEFSLKDLLNNLGQPPVETSDPDVLEAIAFSTGIGGPAGKVELTDLTIKLDD
TTFTGSGSYNLADTGVVFQLQGDQLNADRYLPPKAEGEAEEAPASQETAAAGPEGDLLPL
ETIRSLLLDIDLGLGQLIVSNLTINEIKASTTAKNGMLKVDEFSGKLYEGSFGANVTIDA
RSDNPKWTVGSDVTNVQTLPLLTDLAEVDMLAGGANLKVNANTSGNRISALRSNADGQIS
FNLAEGEFRRMNLTRMACQGIALVNQDELTTTDWGTTTPFNDMRGTLEINGNTLNNTDLV
AALAGMRLEGNGTVDLAQSELDYEVGLRVVGEIHRDNACRVTEYVENAVIPVECRGNFAE
DPAGLCSFDGSRFRDTLKTIAENAAKAKAREEVDKAKAKAEEKVKEKVQEQIGDKLKGLF
N