Protein Info for Psest_3122 in Pseudomonas stutzeri RCH2

Annotation: Outer membrane protein and related peptidoglycan-associated (lipo)proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF18393: MotY_N" amino acids 21 to 165 (145 residues), 139 bits, see alignment E=1.4e-44 PF00691: OmpA" amino acids 179 to 273 (95 residues), 62.7 bits, see alignment E=3.5e-21

Best Hits

KEGG orthology group: None (inferred from 88% identity to psa:PST_1202)

Predicted SEED Role

"Sodium-type flagellar protein motY precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLJ9 at UniProt or InterPro

Protein Sequence (305 amino acids)

>Psest_3122 Outer membrane protein and related peptidoglycan-associated (lipo)proteins (Pseudomonas stutzeri RCH2)
MRLRPLVLLCLLASPANALTFQTRLERVQWQVEGDQFECRLIQPIAGFGSGEFVRRAGEQ
AIFRLQSPERWLGAGSATLLAAAAPWQPARGDINLGVVSVGGGEIPFNSTQLQAGRLLAG
LLEGRSPVVRHRTLHGGDTLEIRLLPARFGKAYEDYRACTAKLLPVNFDQVRQSQIGFPS
SDVVLDPLGRAKLDIILQFMRADPSVNRIELDGHSDNSGNRLLNRDLSRRRALAVQEYLV
ANGVPVEQITLRFHGERYPLVANSSEANRAKNRRVTMRLAREATPPAPATAAAPSSEAPA
NGAPL