Protein Info for Psest_3116 in Pseudomonas stutzeri RCH2

Annotation: electron transport complex, RnfABCDGE type, G subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR01947: electron transport complex, RnfABCDGE type, G subunit" amino acids 17 to 200 (184 residues), 210.8 bits, see alignment E=9.1e-67 PF04205: FMN_bind" amino acids 107 to 197 (91 residues), 69.3 bits, see alignment E=1.8e-23

Best Hits

KEGG orthology group: K03612, electron transport complex protein RnfG (inferred from 89% identity to psa:PST_1208)

Predicted SEED Role

"Electron transport complex protein RnfG" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPA1 at UniProt or InterPro

Protein Sequence (259 amino acids)

>Psest_3116 electron transport complex, RnfABCDGE type, G subunit (Pseudomonas stutzeri RCH2)
MIMMLPEISRSMLKNAAVLGLFAVVTVGAVTLLQQGTAEHIQAAERAAQVRALGEILPAG
SYDNHLLDNSVLLQDRLLGNRSPLPAYIAIKDGRPTAVILQAIAPDGYSGAIHLLVGIRA
DGRVAGVRVIGHRETPGLGDKIDLAKSQWIRGFEDKSLENPQAEGWAVKKDRGEFDQFAG
ATITPRAVVGAVHRALQYFDAHKAELLTPGGETTEATGDALESRSEPEETTVHSRAGSAA
TRDELRTTEPAAEPQGDQP