Protein Info for Psest_0306 in Pseudomonas stutzeri RCH2

Annotation: adenosylmethionine-8-amino-7-oxononanoate transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 TIGR00508: adenosylmethionine-8-amino-7-oxononanoate transaminase" amino acids 15 to 442 (428 residues), 591.2 bits, see alignment E=4.4e-182 PF00202: Aminotran_3" amino acids 26 to 435 (410 residues), 352.6 bits, see alignment E=1.2e-109

Best Hits

KEGG orthology group: K00833, adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC: 2.6.1.62] (inferred from 86% identity to ppf:Pput_4858)

Predicted SEED Role

"Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)" in subsystem Biotin biosynthesis (EC 2.6.1.62)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.6.1.62

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGM9 at UniProt or InterPro

Protein Sequence (467 amino acids)

>Psest_0306 adenosylmethionine-8-amino-7-oxononanoate transaminase (Pseudomonas stutzeri RCH2)
MSLNDSWMQRDLAVLWHPCTQMKDHEQLPLIPIRRGDGVWLEDFDGKRYLDAVSSWWVNV
FGHANPRINQRIKDQVDQLEHVMLAGFSHQPVVELSERLVALTPAGLDRVFYTDNGSTGI
EVALKMSFHYWRNSGRGQKQRFVTLTNSYHGETVAAMSVGDVALFTDTYKPLLLDTFKVP
SPDCYLRPDGVSWEEHSRQMFAHMEQTLAEHHQDIAAVIVEPLIQGAGGMRMYHPVYLKL
LREACDRYEVHLIHDEIAVGFGRTGTMFACEQAGITPDFLCLSKALTGGYLPMAAVLTTD
RIYQAFYDDYSTLRAFLHSHTYTGNPLACAAALATLDIFAEDNVIEANKPLAARMASATA
HLVDHPHVAEVRQTGMALAIEMVQDKASRTAYPWQERRGLKVYQHALERGALLRPLGSVV
YFLPPYCITEEQIDFLAAVATEGIDIATRETSVSVASGSYPGFRDPG