Protein Info for HP15_2965 in Marinobacter adhaerens HP15

Annotation: inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 42 to 59 (18 residues), see Phobius details amino acids 79 to 102 (24 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 193 to 211 (19 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 26 to 262 (237 residues), 158.7 bits, see alignment E=8.2e-51

Best Hits

KEGG orthology group: K02351, putative membrane protein (inferred from 80% identity to maq:Maqu_3278)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PN96 at UniProt or InterPro

Protein Sequence (279 amino acids)

>HP15_2965 inner membrane protein (Marinobacter adhaerens HP15)
MPVSSYLLPYDFSPLTLLSYMLVLGFYGAALLRMPEQDRPGSGRIVTFTLGVMLCYAVMQ
TRFDYYSQYMFFVHRGQHLILHHLGPILIALSNPLPVMRFWYQKILPSVRYWLQPLGWIY
RILQQPFIASFLFVGLIYFWLWPSIHFDAMLSRQLYWIMNWSMLLDGLLFWWLIFDPRSP
AVTNALGYGKRILLLALVAIPQMILGAWIVFSRGMVYDVYEVCGRAWPMPPETDQLLGGL
LTWIPPAMMSILGILIVLRRAMHEDGKFPKSRSLAGGNA