Protein Info for HP15_2930 in Marinobacter adhaerens HP15

Annotation: long-chain fatty acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03349: Toluene_X" amino acids 33 to 376 (344 residues), 89 bits, see alignment E=1.2e-29

Best Hits

Predicted SEED Role

"putative facilitator of salicylate uptake" in subsystem Salicylate and gentisate catabolism or Salicylate ester degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PN61 at UniProt or InterPro

Protein Sequence (417 amino acids)

>HP15_2930 long-chain fatty acid transport protein (Marinobacter adhaerens HP15)
MRIKLALGVAALTAFSPVTALATNGYFSHGYGTISKGMAGAGTALSQDSIAAATNPAGMA
FVGNRIDGGFEVFSPRREYTVEGPVSPPPAFSLQPGTYKSSRNGFVIPHLGFNRELSDTT
SFGVSVFANGGMNTDYSGESGGPFYAGRTGVNLEQLFIAPTWSWEFSDNQAFGISPVIAY
QRFEAEGLQSFAPFSSDPGALSKNGTDDAWGYGYQIGWQGEITDTLRGGLSWRNILKMNE
FDKYRGLFAEQGDFDIPQMFNAGIAWSGLENHWFLLDIQHIRYSEINSVGNPLLPNLQTA
QLGDDNGAGFGWDDMTIVKLGWQWQQTPAHAWRAGVSYGENPISDEDVLFNILAPGVQEW
HFTGGFTHSFSENLDVSGMAFYSPAKTVTGPNPLAPNQTIDLEMYQLGASVSAGWKY