Protein Info for PGA1_c03100 in Phaeobacter inhibens DSM 17395

Annotation: putative aminoglycoside efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1131 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 335 to 354 (20 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 437 to 458 (22 residues), see Phobius details amino acids 465 to 485 (21 residues), see Phobius details amino acids 530 to 550 (21 residues), see Phobius details amino acids 880 to 897 (18 residues), see Phobius details amino acids 904 to 924 (21 residues), see Phobius details amino acids 930 to 954 (25 residues), see Phobius details amino acids 975 to 994 (20 residues), see Phobius details amino acids 1009 to 1033 (25 residues), see Phobius details amino acids 1054 to 1078 (25 residues), see Phobius details amino acids 1100 to 1120 (21 residues), see Phobius details PF00873: ACR_tran" amino acids 14 to 1028 (1015 residues), 467.9 bits, see alignment E=6.5e-144 PF02355: SecD_SecF_C" amino acids 872 to 1029 (158 residues), 25 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 78% identity to sit:TM1040_3066)

Predicted SEED Role

"Transporter, AcrB/AcrD/AcrF family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EIS6 at UniProt or InterPro

Protein Sequence (1131 amino acids)

>PGA1_c03100 putative aminoglycoside efflux pump (Phaeobacter inhibens DSM 17395)
MLRNLPRSAGGVLSYFTRHRTLSNLLLVLLLVLGAAAIPNMRAQFFPDVIVDRVSVSVEW
EGAGPEDIDSAIVQALEPALLAVDGVESSSATSREGRASISLDFEPGWDMARAADDVQSA
VDGITTLPEEAEDPSVRRGAWRDRVTDVVITGPIAPRQLGLFADELVVRLFEVGVTRTTI
RGIAAPQTMVEVPSASLIAHDIAMADIAAAIAAEVDANPAGDVSGANARIRTGSEKRTPE
ELAGIVLRTNPDGSALTVGDVATIRVEGVDRNRSYFVGDNPAMSIRVDRSDQGDAIDIQH
QVEDVVEALQASLPDGVSADLIRTRAEAITGRLDILVDNGLMGLGLVLALLFLFLNARIA
FWVAAGIPAAMFAAIALMYMAGLTINMISLFGLIITLGIVVDDAIVVGEHADFRARRLGE
HPVAAAENAARRMAMPVFAATLTTVIAFFGLVSIGGRFGELIRDIPLTVIAVLLGSLIEC
FLILPNHLAHALAHSAKEHWYDLPSRVVNRGFRRLRDTLFRPLMALVVRARYVVLAAAAV
ILASQLALFIGGDVKWRFFNAPERGSVTGNFAMAEGATRADTLAMMQEMQRAVEALGQDY
EARHGRNPVDFVMAEIGGNAGRGLAGVDAKDSDLLGGISIELIDADLRPYSSFAFVAELQ
DSVRRHPLAETVSFRGWRSGPGGDALDVQFSGAAVEVLKAASEDLKTAVLRYPEVSAVED
NLAYDKEELVLELTPQGRALEFTVETLGRALRARLNGIEAATYPDGPRSAAIRVELPEGE
LTADFLERTLMRSPAGVYLPLADIVSVTQRTGFSTVRRENGVRVISVTGDISEDDPARAQ
AIVTALQEEILPKIASERQVDWQLAGLSEQENEFLNDARTGLILCLTGIYLVLAWIFASW
TRPLVVMAIIPFGLVGTIWGHYLWEVPLSMFTVVGLLGMTGIIINDSIVLVTTIDEYAEE
RGLIPSIIDGAADRLRPVMLTTLTTVLGLAPLMYEGSQQAQFLKPTVITLVYGLGFGMFL
VLLVVPALVAVQADVARPFAALRRGMSSRAGDLRWLTLGLGAAQILWLALTVGYAMAVGA
LHPVLRAAAPELVEMDPLRAALLLFVAGAVLLSLMSYVTARMLGGRRASIR