Protein Info for Psest_3035 in Pseudomonas stutzeri RCH2

Annotation: Protein of unknown function (DUF1282).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 transmembrane" amino acids 30 to 54 (25 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 164 to 192 (29 residues), see Phobius details PF04893: Yip1" amino acids 6 to 181 (176 residues), 160.3 bits, see alignment E=2.1e-51

Best Hits

Swiss-Prot: 56% identical to YOHC_ECOLI: Inner membrane protein YohC (yohC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to psa:PST_1274)

Predicted SEED Role

"probable membrane protein YPO2362"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLC4 at UniProt or InterPro

Protein Sequence (199 amino acids)

>Psest_3035 Protein of unknown function (DUF1282). (Pseudomonas stutzeri RCH2)
MINHVWGLFTHPGQEWTEIRGEEETVSHMYLTHVLLLAAIPAVSAYIGATQVGWSIGGGE
PVKLTQASCMQLAILSYFAMLAGVAVMGGFIHWMARTYDANPTLTQCIVFAAYTATPLFI
GGLAGLYPHLWLGMLVGTAAVCYTAYLLYVGLPKFMNIPEDEGFMFSSSVLAVGLVVLVA
IIALSVITWGMGIGPVYVR