Protein Info for Psest_3020 in Pseudomonas stutzeri RCH2

Annotation: Cell wall-associated hydrolases (invasion-associated proteins)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00877: NLPC_P60" amino acids 85 to 195 (111 residues), 100.7 bits, see alignment E=2.2e-33

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_1285)

Predicted SEED Role

"NLP/P60 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQE0 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Psest_3020 Cell wall-associated hydrolases (invasion-associated proteins) (Pseudomonas stutzeri RCH2)
MRQRFAPLVPLALIALLTACAGQPVQTEQQITSPRLSHNHPLAGFDFAALDKSEEESLAE
LTDEHEYQLPELADSILERGFTLVGTPYRFGGSSVKTGFDCSGFVGFLFRKEAGLELPRS
TRELINLDAPVVKRNELEPGDVVFFNNRGRGRVSHAGIYIGDDQFIHASSSRSGGVRVDS
LDDKYWRASYMEAKRVLALATDLEPHTVQR