Protein Info for Psest_3015 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 40 (6 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_1290)

Predicted SEED Role

"Optional hypothetical component of the B12 transporter BtuM" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GQD5 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Psest_3015 hypothetical protein (Pseudomonas stutzeri RCH2)
MIKLAPRYQLLVGLALAALLAMTRGQHFASVNLPSASWAVFFLAGVLVRPKWVFPALFLE
ASLLDFAAIQWAGVSDWCMSPAYWMLVPAYGSLWLGGRLYARLHRDHFSSLATLALCVMA
SAFVCYLFSGGGFLYFSGRYPEPTLALLAERIATYYPRYLSTLALYVGVAALLFVGLRAW
AGQRDEARA