Protein Info for PGA1_c29840 in Phaeobacter inhibens DSM 17395

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details PF00892: EamA" amino acids 4 to 136 (133 residues), 50.3 bits, see alignment E=1.6e-17 amino acids 145 to 275 (131 residues), 44.1 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: None (inferred from 66% identity to sit:TM1040_3761)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F2M0 at UniProt or InterPro

Protein Sequence (318 amino acids)

>PGA1_c29840 putative integral membrane protein (Phaeobacter inhibens DSM 17395)
MNIKAALLALLAYAIFSTHDVVVKILGADVSPVQLVFFSSLLSFPLLVLMLVKDATPGHL
RPVHPWWMAARSATMAVIPASAFYAFSELPLAETYALLFATPLLITLLSIPILGERVGLP
RLAAVVVGFIGVMVVLRPGATSFGLGHAAALFASFCAAFQSVVLRKISADERRVVLMIYP
MLMTFAVMGLALPLVYVPLEGVTFSGIAIVALFGFCATLLTVSAYTIGEAAIVAPMQYSQ
IIWATIFSVVLFNEKVDLMTLVGAAIIIASGIFIVLREAFGGRSDNTPVLRTRTRGYTAG
GTNVSLMLKRRSEEKPAE