Protein Info for PGA1_c29730 in Phaeobacter inhibens DSM 17395

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 188 to 215 (28 residues), see Phobius details PF04654: DUF599" amino acids 17 to 222 (206 residues), 212.2 bits, see alignment E=2.9e-67

Best Hits

KEGG orthology group: None (inferred from 66% identity to sil:SPO3477)

Predicted SEED Role

"FIG01072994: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E4B4 at UniProt or InterPro

Protein Sequence (252 amino acids)

>PGA1_c29730 Predicted membrane protein (Phaeobacter inhibens DSM 17395)
MTLLDRITLFSPADLAACVFLILCWLGIGWRIENAKAEYPSVSGLMAEFRHAWMIQMVQR
EPRIFDAQLISNLRQGSAFFASASMIAIGGGLALIGNTDQLAGVAQDLSLESAPAFVWDV
KILMVLLLLSNAFLKYVWAHRLFGYCFVLMAAVPNTDADAQAYPRASQAADLSITAARSF
NRAMRSTYFALAAVAWLIGSWALIAAALVTFAVLYRREFASQSRSILQRVPANTTPPVPD
VTAGADRGNTQM