Protein Info for HP15_2842 in Marinobacter adhaerens HP15

Annotation: transcriptional regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details PF12833: HTH_18" amino acids 150 to 230 (81 residues), 56.2 bits, see alignment E=1.8e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PM94 at UniProt or InterPro

Protein Sequence (238 amino acids)

>HP15_2842 transcriptional regulatory protein (Marinobacter adhaerens HP15)
MAVFFGWRLGQFFEYVVVLHGLSFVIRYWRNDLVETRRKARLAFLLIIGGAVGIATISLN
FGLYHEYSRGIISGLAAFATLICLVTAREGIMDLVGSDLSSGQRPSRLNANLNSDPQEPL
SAQQEQDAEALGRTMAEGFYRTEKLTLKKLSEATDIPEYRLRKVINQALGYRNFNDYINQ
LRVAEASERLLDEPETPVLNISLDVGYRTLSSFNRAFRDIQNTTPTEFRQARSGADIG