Protein Info for Psest_2945 in Pseudomonas stutzeri RCH2

Annotation: septum site-determining protein MinC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 TIGR01222: septum site-determining protein MinC" amino acids 12 to 241 (230 residues), 269.7 bits, see alignment E=1.1e-84 PF05209: MinC_N" amino acids 13 to 84 (72 residues), 74.8 bits, see alignment E=4.5e-25 PF03775: MinC_C" amino acids 137 to 238 (102 residues), 107.4 bits, see alignment E=3.4e-35

Best Hits

Swiss-Prot: 91% identical to MINC_PSEU5: Probable septum site-determining protein MinC (minC) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K03610, septum site-determining protein MinC (inferred from 91% identity to psa:PST_1425)

Predicted SEED Role

"Septum site-determining protein MinC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GL10 at UniProt or InterPro

Protein Sequence (241 amino acids)

>Psest_2945 septum site-determining protein MinC (Pseudomonas stutzeri RCH2)
MSQADLTDQSPAFQLKGSMLAITVLELASNDIERLDEQLAAKVEQAPDFFNNTPLVLALD
KLPESAREIDIAALVSLCRKHRLRTLALRASEPVHLEAAAALDLPVLPPSGARERKVDLG
SKIPPKPAEPTYRPTRVVTTPIRGGQQVYAQGGDLIVLAPVSPGAELLADGNIHVYGPLR
GRALAGIKGDTSARIFCQQLAAEMVSIAGQYKVAEDLRREPLWAEAVQISLSGDVLNITR
L