Protein Info for PGA1_c29290 in Phaeobacter inhibens DSM 17395
Annotation: putative pterin 4 alpha carbinolamine dehydratase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 78% identical to PHS_ROSDO: Putative pterin-4-alpha-carbinolamine dehydratase (RD1_0944) from Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
KEGG orthology group: K01724, 4a-hydroxytetrahydrobiopterin dehydratase [EC: 4.2.1.96] (inferred from 78% identity to rde:RD1_0944)MetaCyc: 50% identical to Pterin-4-alpha-carbinolamine dehydratase (Homo sapiens)
4a-hydroxytetrahydrobiopterin dehydratase. [EC: 4.2.1.96]
Predicted SEED Role
"Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)" in subsystem Pterin biosynthesis (EC 4.2.1.96)
MetaCyc Pathways
- tetrahydropteridine recycling (1/2 steps found)
- L-phenylalanine degradation V (1/3 steps found)
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.2.1.96
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7DU27 at UniProt or InterPro
Protein Sequence (97 amino acids)
>PGA1_c29290 putative pterin 4 alpha carbinolamine dehydratase (Phaeobacter inhibens DSM 17395) MTEKLSDATRGPLLDPLFSAGWQVVNGRDAITKTYKFDSFVDAFGWMTRAAIWAEKWDHH PEWSNVYNTVTVTLTTHDVGGISALDAKLARKMESLF