Protein Info for Psest_2937 in Pseudomonas stutzeri RCH2

Annotation: Short-chain alcohol dehydrogenase of unknown specificity

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF00106: adh_short" amino acids 5 to 190 (186 residues), 173.1 bits, see alignment E=7.4e-55 PF08659: KR" amino acids 6 to 162 (157 residues), 39.5 bits, see alignment E=8.7e-14 PF13561: adh_short_C2" amino acids 9 to 218 (210 residues), 144.3 bits, see alignment E=7.3e-46

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_1433)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPY0 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Psest_2937 Short-chain alcohol dehydrogenase of unknown specificity (Pseudomonas stutzeri RCH2)
MHNRMMITGAGSGLGREIALRWAREGWQLALSDVNEGGLAETLKMVREAGGDGFTMRCDV
RDYSQLIAFAQACEEKLGGIDIVVNNAGVASGGFFDELSLEDWEWQIAINLMGVVKGCKA
FLPLVQKSKGKIINIASMAALMQAPGMSNYNVAKAGVVALSESLLVELRQAEVGVHVVCP
SFFQTNLLDSFRGPTPNVKAQIGKLLESSPITAADIADYIHQQVAKGEFMILPHDEGRMA
WKVKQQNPQAIYDEMALLAEKKRAKSKAL