Protein Info for Psest_2922 in Pseudomonas stutzeri RCH2

Annotation: Lhr-like helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1475 transmembrane" amino acids 1041 to 1060 (20 residues), see Phobius details PF00270: DEAD" amino acids 51 to 236 (186 residues), 104.3 bits, see alignment E=1.6e-33 PF04851: ResIII" amino acids 65 to 235 (171 residues), 31 bits, see alignment E=5.7e-11 PF00271: Helicase_C" amino acids 294 to 391 (98 residues), 71.2 bits, see alignment 2.2e-23 PF08494: DEAD_assoc" amino acids 673 to 875 (203 residues), 165.4 bits, see alignment E=3.5e-52

Best Hits

Predicted SEED Role

"probable ATP-dependent DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPW4 at UniProt or InterPro

Protein Sequence (1475 amino acids)

>Psest_2922 Lhr-like helicases (Pseudomonas stutzeri RCH2)
MAVSLSPTGCRLCNAGGATIFIDMSISSAGPLGRFHPAVAGWFSRSFPAPTPAQAAAWPL
IRAGRSTLVAAPTGSGKTLTAFLAAIDGLVQQGLAEGGLADATRVLYVSPLKALSNDIHI
NLEEPLAGITAELARLGLPPLEIRTAVRTGDTPQAERNAMRKRVPHILVTTPESLYVLLS
SASGREMLADVQSVIVDEIHAIAGNKRGSHLALSLERLEALCNRPLVRVGLSATQKPIDA
VARFLAGVERPCEIVDIGHGRARDLALEVPSVPLEAVMSNDAWALVYDRLAALAGEHRTT
LVFVNTRRMAERTTRHLAERLGAEVVAAHHGSLAREQRLSAEQKLKRGELRVLVATASLE
LGIDIGDVELVCQLGSPRSISAFLQRVGRAGHQVAGVSKGRLFPGSRDDLIECAALFDAV
RRGELDTLKIPQAPLDVLAQQIVAEVACREWEEGALLQLLRRAMPYAALDEATFQALLRM
LAEGYTTRHGTRGAYLHRDLATRSLRGRRGGRLTALTSGGTIADNADYAVLLEPQGLNIG
TVNEDFAIESLAGDVFQLGNTSYRILKIESGRVRVEDAQGMPPSIPFWLGEAPGRSDELS
FAVARLRDEIDRRLHDAATAADDAAKSPGVVSSASSRLAPAIDWLTGSLGLSDDAARQIV
EYLARARSALGALPTQQRLVMERFFDEPGGTQLVIHSPYGSRINRAWGLALRKRFCRTFN
FELQAAATEDAIILSLSTSHSFPLADVWRYLHSASAEQVLIQALLDAPLFGVRWRWIATT
ALALPRMAGGRKVAPQLQRMKSEDLLATVFPDQVACLENIVGEREIPDHPLVRQTLDDCL
HEAMDSEGWLALLRRMERGEIELLARDLPAPSPLAMEILGARPYAFLDDAPLEERRTQAV
LARRWSDPESSDDLGALDPEAIAAVREEAWPEARNADEMHEALTALGCIAEAEAAAQPQW
LAWLTELARAGRATRMQIAHDRVLWLPLERLALLRAIYPQAPFEPHLQAPVGYDQPLAEE
DALVELIRARLSGFGPLPVSLIARPLALPASAVAMALIRLESQGYVMRGRFSAGAVEDEW
CERHLLARIHRYTVKRLRREIEPVERADFMRFLADWQHLSATTRMQGREALASVVEQLEG
YQAAAAAWEADLLPTRLKDYGGTWLDELCRSGRIVWTRLAGRLKASGGPVRGTPVVLLPR
RQLPAWYALAGDAPMPELSSRAQRVFDYLQTHGALFFDELQHDAHLLRSELEDALGELVA
VGLVNADSFAGLRSLLAPASKRSRAARRSRGGAFIGGMDDAGRWALVRKPGTANDASRPA
KVDAEALEHIARVLLRRYGVVFWRLLAREADWLPPWRELLRVYHRLEARGEIRGGRFVAG
VAGEQFALPGAVGLLREVRKRPLTGEMLAVSAVDPLNQLGTLLPGSKVPALAANRILYRD
GTPLAVLVAGKPQWLVELDETGQLEARRLLLSARR