Protein Info for Psest_2878 in Pseudomonas stutzeri RCH2

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 72 to 98 (27 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 171 to 185 (15 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 8 to 308 (301 residues), 158.1 bits, see alignment E=1.8e-50 TIGR00374: TIGR00374 family protein" amino acids 38 to 313 (276 residues), 91.5 bits, see alignment E=3.5e-30

Best Hits

KEGG orthology group: None (inferred from 92% identity to psa:PST_1502)

Predicted SEED Role

"FIG00955324: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNK3 at UniProt or InterPro

Protein Sequence (330 amino acids)

>Psest_2878 conserved hypothetical protein (Pseudomonas stutzeri RCH2)
MTRRWWILAGALLGAALVPLLLGGTGLFERLRNFPGSLLAVMLGMVLLGWNLNALRLRLL
LGRRQLGQRRAFGIVVATEFAICATPGGAGGPLTLMALLMRQGVAPAKGTATYAVEQLTD
LLFFACALVGVLIYALTHALNAHIANLLGFSVALLIGVMVLLALLGRFHRQVFLLNGWLV
TRLGMKQARKRRWARKVLSFRNALVDCFRLPRRVLLAVFGLTTLHWLLRFSVLYLTLQGL
GSELAWAWTFLVQLLALTAGQLSLLPGGAGSAELASAALLTPMVGKSTTAAAIVIWRFVT
YYFYLIAGAPVFLHLAGRPLLHRLMPSRQA